Publicaciones en las que colabora con Joaquín Dopazo Blázquez (37)

2024

  1. The mechanistic functional landscape of retinitis pigmentosa: a machine learning-driven approach to therapeutic target discovery

    Journal of translational medicine, Vol. 22, Núm. 1, pp. 139

  2. drexml: A command line tool and Python package for drug repurposing

    Computational and Structural Biotechnology Journal, Vol. 23, pp. 1129-1143

2023

  1. A Comprehensive Analysis of 21 Actionable Pharmacogenes in the Spanish Population: From Genetic Characterisation to Clinical Impact

    Pharmaceutics, Vol. 15, Núm. 4

  2. A crowdsourcing database for the copy-number variation of the Spanish population

    Human Genomics, Vol. 17, Núm. 1

  3. Cell-Level Pathway Scoring Comparison with a Biologically Constrained Variational Autoencoder

    Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

  4. Crosstalk between Metabolite Production and Signaling Activity in Breast Cancer

    International Journal of Molecular Sciences, Vol. 24, Núm. 8

  5. Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches

    Frontiers in Immunology, Vol. 14

  6. Functional Profiling of Soft Tissue Sarcoma Using Mechanistic Models

    International Journal of Molecular Sciences, Vol. 24, Núm. 19

  7. Real-world evidence with a retrospective cohort of 15,968 COVID-19 hospitalized patients suggests 21 new effective treatments

    Virology Journal, Vol. 20, Núm. 1

  8. SigPrimedNet: A Signaling-Informed Neural Network for scRNA-seq Annotation of Known and Unknown Cell Types

    Biology, Vol. 12, Núm. 4

  9. Visualization of automatically combined disease maps and pathway diagrams for rare diseases

    Frontiers in Bioinformatics, Vol. 3

  10. microRNAs-mediated regulation of insulin signaling in white adipose tissue during aging: Role of caloric restriction

    Aging Cell, Vol. 22, Núm. 11

2022

  1. Assessing the Impact of SARS-CoV-2 Lineages and Mutations on Patient Survival

    Viruses, Vol. 14, Núm. 9

  2. Discovering potential interactions between rare diseases and COVID-19 by combining mechanistic models of viral infection with statistical modeling

    Human molecular genetics, Vol. 31, Núm. 12, pp. 2078-2089

  3. Integrating pathway knowledge with deep neural networks to reduce the dimensionality in single-cell RNA-seq data

    BioData Mining, Vol. 15, Núm. 1

  4. Towards a metagenomics machine learning interpretable model for understanding the transition from adenoma to colorectal cancer

    Scientific Reports, Vol. 12, Núm. 1

2021

  1. A DNA damage repair gene-associated signature predicts responses of patients with advanced soft-tissue sarcoma to treatment with trabectedin

    Molecular Oncology, Vol. 15, Núm. 12, pp. 3691-3705

  2. A comprehensive database for integrated analysis of omics data in autoimmune diseases

    BMC Bioinformatics, Vol. 22, Núm. 1

  3. A versatile workflow to integrate RNA-seq genomic and transcriptomic data into mechanistic models of signaling pathways

    PLoS Computational Biology, Vol. 17, Núm. 2

  4. COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms

    Molecular Systems Biology, Vol. 17, Núm. 10